Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HepG2
cell organism
human
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
CHD2_(AB68301)
antibody antibodydescription
Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2
antibody targetdescription
CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.
antibody vendorname
Abcam
antibody vendorid
ab68301
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001791
replicate
1

Sequenced DNA Library

library_name
GSM935307: Stanford_ChipSeq_HepG2_CHD2_(AB68301)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
48871992
Reads aligned (%)
87.2
Duplicates removed (%)
5.5
Number of peaks
7341 (qval < 1E-05)

hg38

Number of total reads
48871992
Reads aligned (%)
89.0
Duplicates removed (%)
4.3
Number of peaks
7422 (qval < 1E-05)

Base call quality data from DBCLS SRA