SRX150375
GSM935295: Stanford ChipSeq H1-hESC CEBPB IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPB

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
CEBPB
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: CEBPB
antibody targetdescription
epitope mapping at the C-terminus of C/EBP-beta of rat origin
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-150
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001834
replicate
1

Sequenced DNA Library

library_name
GSM935295: Stanford_ChipSeq_H1-hESC_CEBPB_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
52613013
Reads aligned (%)
89.6
Duplicates removed (%)
7.6
Number of peaks
26019 (qval < 1E-05)

hg38

Number of total reads
52613013
Reads aligned (%)
91.2
Duplicates removed (%)
6.5
Number of peaks
25453 (qval < 1E-05)

Base call quality data from DBCLS SRA