Antigen

Antigen Class

TFs and others

Antigen

EP300

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

p300

antibody antibodydescription

Rabbit Polyclonal. Antibody Target: P300

antibody targetdescription

EP300(c-20)

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-585

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000706

replicate

1

Sequenced DNA Library

library_name

GSM935294: Stanford_ChipSeq_GM12878_p300_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

53861589

Reads aligned (%)

95.8

Duplicates removed (%)

8.2

Number of peaks

20213 (qval < 1E-05)

hg19

Number of total reads

53861589

Reads aligned (%)

94.9

Duplicates removed (%)

9.3

Number of peaks

20886 (qval < 1E-05)