Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MXI1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
Mxi1_(AF4185)
antibody antibodydescription
Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription
Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname
R&D Systems
antibody vendorid
AF4185
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001834
replicate
1

Sequenced DNA Library

library_name
GSM935293: Stanford_ChipSeq_H1-hESC_Mxi1_(AF4185)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
61783189
Reads aligned (%)
89.5
Duplicates removed (%)
6.5
Number of peaks
8244 (qval < 1E-05)

hg38

Number of total reads
61783189
Reads aligned (%)
91.4
Duplicates removed (%)
5.2
Number of peaks
8668 (qval < 1E-05)

Base call quality data from DBCLS SRA