Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM15510

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM15510

biomaterial_provider

Coriell

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM15510

cell organism

human

cell description

lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

cell karyotype

normal

cell lineage

mesoderm

cell sex

U

treatment

None

treatment description

No special treatment or protocol applies

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000713

labversion

Illumina 2.0, low confidence sequences excluded

replicate

1

Sequenced DNA Library

library_name

GSM935284: Stanford_ChipSeq_GM15510_Input_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

35300070

Reads aligned (%)

55.4

Duplicates removed (%)

4.2

Number of peaks

376 (qval < 1E-05)

hg19

Number of total reads

35300070

Reads aligned (%)

53.8

Duplicates removed (%)

4.5

Number of peaks

723 (qval < 1E-05)