Antigen

Antigen Class

TFs and others

Antigen

RELA

Cell type

Cell type Class

Blood

Cell type

GM18526

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM18505

biomaterial_provider

Coriell

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM18505

cell organism

human

cell description

lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

TNFa

treatment description

human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)

antibody

NFKB

antibody antibodydescription

Rabbit polyclonal. Antibody Target: NFKB

antibody targetdescription

Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-372

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000775

labversion

remapped from hg18, Data paired with GM18505_IgG_Control

replicate

1

Sequenced DNA Library

library_name

GSM935282: Stanford_ChipSeq_GM18505_TNFa_NFKB_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

78727437

Reads aligned (%)

68.6

Duplicates removed (%)

4.4

Number of peaks

17447 (qval < 1E-05)

hg19

Number of total reads

78727437

Reads aligned (%)

66.4

Duplicates removed (%)

3.5

Number of peaks

17860 (qval < 1E-05)