Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID3A

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HepG2
cell organism
human
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
ARID3A_(NB100-279)
antibody antibodydescription
Rabbit polyclonal, Immunogen: A synthetic peptide, which represented a portion of human Dead Ringer-Like 1 encoded within exon 8. Antibody Target: ARID3A
antibody targetdescription
This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. It was found by homology to the Drosophila dead ringer gene, which is important for normal embryogenesis. Other ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation, and possibly in chromatin structure modification. (provided by RefSeq)
antibody vendorname
Novus Biologicals
antibody vendorid
NB100-279
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001791
replicate
1

Sequenced DNA Library

library_name
GSM935275: Stanford_ChipSeq_HepG2_ARID3A_(NB100-279)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
47760371
Reads aligned (%)
93.0
Duplicates removed (%)
4.7
Number of peaks
27673 (qval < 1E-05)

hg38

Number of total reads
47760371
Reads aligned (%)
94.6
Duplicates removed (%)
3.7
Number of peaks
27294 (qval < 1E-05)

Base call quality data from DBCLS SRA