SRX150354
GSM935274: Stanford ChipSeq HepG2 CEBPZ IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPZ

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HepG2
cell organism
human
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
CEBPZ
antibody antibodydescription
KDNASLKQLRWEAERDDWLHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK. Antibody Target: CEBPZ
antibody targetdescription
Stimulates transcription from the HSP70 promoter.
antibody vendorname
Sigma-Aldrich
antibody vendorid
SAB2100398
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001791
replicate
1

Sequenced DNA Library

library_name
GSM935274: Stanford_ChipSeq_HepG2_CEBPZ_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66267342
Reads aligned (%)
98.2
Duplicates removed (%)
5.1
Number of peaks
1757 (qval < 1E-05)

hg19

Number of total reads
66267342
Reads aligned (%)
97.2
Duplicates removed (%)
6.4
Number of peaks
1767 (qval < 1E-05)

Base call quality data from DBCLS SRA