Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Alpha-TN4
NA
NA

Attributes by original data submitter

Sample

source_name
αTN4, control shRNA, input
cell line
alpha-TN4
cell type
lens epithelial cell line
shRNA
control
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq: The newborn (P1) lenses of CD-1 mice (Charles River Laboratories) were dissected, tissue was freshly crosslinked and homogenized. Sonicated lysates were clarified and histone-DNA complexes were isolated with antibody. αTN4 cells were freshly crosslinked and homogenized in the culture dish. Sonicated lysates were clarified and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
35312670
Reads aligned (%)
94.6
Duplicates removed (%)
11.5
Number of peaks
352 (qval < 1E-05)

mm9

Number of total reads
35312670
Reads aligned (%)
94.5
Duplicates removed (%)
11.5
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA