Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC4

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_SNAP190
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody CS696 #4,5
chip antibody reference
Mittal, V., Ma, B., and Hernandez, N. (1999). Genes and Development 13, 1807-1821.

Sequenced DNA Library

library_name
GSM938415: SNAP190_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
15829607
Reads aligned (%)
63.8
Duplicates removed (%)
29.0
Number of peaks
752 (qval < 1E-05)

hg38

Number of total reads
15829607
Reads aligned (%)
65.7
Duplicates removed (%)
27.5
Number of peaks
811 (qval < 1E-05)

Base call quality data from DBCLS SRA