Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_SNAP43
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody CS47 #7,8
chip antibody reference
Rabbit anti-peptide antibody raised against SNAPC1 peptide lehqqwhkdrknpslksk, Faresse, N., et al., PLoS Genetics, submitted.

Sequenced DNA Library

library_name
GSM938413: SNAP43_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
29743281
Reads aligned (%)
56.8
Duplicates removed (%)
41.5
Number of peaks
1090 (qval < 1E-05)

hg38

Number of total reads
29743281
Reads aligned (%)
58.7
Duplicates removed (%)
40.0
Number of peaks
1096 (qval < 1E-05)

Base call quality data from DBCLS SRA