Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SNAPC1
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150108
GSM938413: SNAP43 ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SNAPC1
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
IMR90hTert_SNAP43
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody CS47 #7,8
chip antibody reference
Rabbit anti-peptide antibody raised against SNAPC1 peptide lehqqwhkdrknpslksk, Faresse, N., et al., PLoS Genetics, submitted.
Sequenced DNA Library
library_name
GSM938413: SNAP43_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
29743281
Reads aligned (%)
97.7
Duplicates removed (%)
40.0
Number of peaks
1096 (qval < 1E-05)
hg19
Number of total reads
29743281
Reads aligned (%)
97.1
Duplicates removed (%)
41.5
Number of peaks
1090 (qval < 1E-05)
Base call quality data from
DBCLS SRA