Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_SNAP45
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene

Sequenced DNA Library

library_name
GSM938412: SNAP45_ChIPSeq_225-275
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
12493015
Reads aligned (%)
81.7
Duplicates removed (%)
13.6
Number of peaks
803 (qval < 1E-05)

hg38

Number of total reads
12493015
Reads aligned (%)
83.1
Duplicates removed (%)
12.5
Number of peaks
743 (qval < 1E-05)

Base call quality data from DBCLS SRA