SRX150106
GSM938411: SNAP45 ChIPSeq 175-225; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_SNAP45
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene

Sequenced DNA Library

library_name
GSM938411: SNAP45_ChIPSeq_175-225
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
11326702
Reads aligned (%)
90.8
Duplicates removed (%)
13.1
Number of peaks
672 (qval < 1E-05)

hg38

Number of total reads
11326702
Reads aligned (%)
91.4
Duplicates removed (%)
12.2
Number of peaks
698 (qval < 1E-05)

Base call quality data from DBCLS SRA