SRX150105
GSM938410: TF2B ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GTF2B

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_TF2B
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody CS369 #10, 11
chip antibody reference
Hu, P., Wu, S., and Hernandez, N. (2003) Mol. Cell 12, 699-709

Sequenced DNA Library

library_name
GSM938410: TF2B_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
33138168
Reads aligned (%)
76.1
Duplicates removed (%)
20.2
Number of peaks
3537 (qval < 1E-05)

hg38

Number of total reads
33138168
Reads aligned (%)
78.0
Duplicates removed (%)
18.8
Number of peaks
3676 (qval < 1E-05)

Base call quality data from DBCLS SRA