SRX150103
GSM938408: BRF2 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRF2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_Brf2
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody 940.505 #74
chip antibody reference
Rabbit anti-peptide antibody raised against anti-Brf2 peptides C-TYSRSTGENEQVSR-coNH2 (position 54-67) and C-IEQYLRTPQEVRDF-coNH2 (position 389-482): Faresse, N., et al. PLoS Genetics, submitted

Sequenced DNA Library

library_name
GSM938408: BRF2_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
32913286
Reads aligned (%)
75.3
Duplicates removed (%)
20.8
Number of peaks
1243 (qval < 1E-05)

hg38

Number of total reads
32913286
Reads aligned (%)
77.0
Duplicates removed (%)
19.5
Number of peaks
1360 (qval < 1E-05)

Base call quality data from DBCLS SRA