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Colocalization
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BRF2
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150103
GSM938408: BRF2 ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BRF2
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
IMR90hTert_Brf2
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody 940.505 #74
chip antibody reference
Rabbit anti-peptide antibody raised against anti-Brf2 peptides C-TYSRSTGENEQVSR-coNH2 (position 54-67) and C-IEQYLRTPQEVRDF-coNH2 (position 389-482): Faresse, N., et al. PLoS Genetics, submitted
Sequenced DNA Library
library_name
GSM938408: BRF2_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
32913286
Reads aligned (%)
75.3
Duplicates removed (%)
20.8
Number of peaks
1243 (qval < 1E-05)
hg38
Number of total reads
32913286
Reads aligned (%)
77.0
Duplicates removed (%)
19.5
Number of peaks
1360 (qval < 1E-05)
Base call quality data from
DBCLS SRA