SRX149713
GSM937870: K562.input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell line
K562
transgene
none
epitope tag
none
antibody
none

Sequenced DNA Library

library_name
GSM937870: K562.input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50581176
Reads aligned (%)
97.9
Duplicates removed (%)
12.9
Number of peaks
6179 (qval < 1E-05)

hg19

Number of total reads
50581176
Reads aligned (%)
97.3
Duplicates removed (%)
14.0
Number of peaks
7267 (qval < 1E-05)

Base call quality data from DBCLS SRA