Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SCML2

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex
cell line
293T-Rex
transgene
N3 (empty vector)
epitope tag
Flag-HA-OneSTrEP (N-terminal)
antibody
SCML2 (in-house) batch# Rb1199-1004

Sequenced DNA Library

library_name
GSM937860: 293Trex_N3.SCML2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
33776651
Reads aligned (%)
90.6
Duplicates removed (%)
7.3
Number of peaks
929 (qval < 1E-05)

hg38

Number of total reads
33776651
Reads aligned (%)
92.2
Duplicates removed (%)
6.1
Number of peaks
651 (qval < 1E-05)

Base call quality data from DBCLS SRA