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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CDK8
wikigenes
PDBj
CellType: HCT 116
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX149660
GSM937562: CDK8-ChIP enriched DNA, hypoxia, replicate1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CDK8
Cell type
Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
colorectal cancer cells, hypoxia, CDK8 ChIP
cell line
HCT116
treatment
24hrs hypoxia (1%O2)
chip antibody
CDK8
antibody vendor
Santa Cruz
Sequenced DNA Library
library_name
GSM937562: CDK8-ChIP enriched DNA, hypoxia, replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
164134451
Reads aligned (%)
97.7
Duplicates removed (%)
11.5
Number of peaks
26431 (qval < 1E-05)
hg19
Number of total reads
164134451
Reads aligned (%)
96.9
Duplicates removed (%)
12.9
Number of peaks
25778 (qval < 1E-05)
Base call quality data from
DBCLS SRA