SRX149659
GSM937561: CDK8-ChIP enriched DNA, normoxia; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDK8

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
colorectal cancer cells, normoxia, CDK8 ChIP
cell line
HCT116
treatment
normoxia
chip antibody
CDK8
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM937561: CDK8-ChIP enriched DNA, normoxia
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
68335557
Reads aligned (%)
97.5
Duplicates removed (%)
14.2
Number of peaks
20053 (qval < 1E-05)

hg19

Number of total reads
68335557
Reads aligned (%)
96.8
Duplicates removed (%)
15.7
Number of peaks
20012 (qval < 1E-05)

Base call quality data from DBCLS SRA