Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA

Attributes by original data submitter

Sample

source_name
In vitro cultured osteoblasts
cell line
osteoblastic cell line MC3T3-E1
protocol
cultured for 1 week in osteogenic medium
chip antibody
none (input)
passages
5-10

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were isolated by 1 unit/ml Liberase TM (05401119001, Roche), Protein-DNA complexes were crosslinked with 1% formaldehyde, Lysates were clarified from sonicated nuclei and Protein-DNA complexes were purified with FLAG antibody. Libraries were prepared ThruPLEX®-FD Prep Kit (R40012, Rubicon Genomics) according to manufacturer’s instruction

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
37295149
Reads aligned (%)
97.2
Duplicates removed (%)
17.0
Number of peaks
330 (qval < 1E-05)

mm9

Number of total reads
37295149
Reads aligned (%)
96.9
Duplicates removed (%)
16.9
Number of peaks
370 (qval < 1E-05)

Base call quality data from DBCLS SRA