Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXM1

Cell type

Cell type Class
Bone
Cell type
U2OS
Tissue
bone
Lineage
mesoderm
Description
osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

Attributes by original data submitter

Sample

source_name
U2OS_FOXM1_ChIP-seq
cell line
U2OS
cell type
Osteosarcoma
passage
7-10
chip antibody
FOXM1 (C-20)
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM936206: FOXM1_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
36900198
Reads aligned (%)
95.1
Duplicates removed (%)
67.0
Number of peaks
398 (qval < 1E-05)

hg38

Number of total reads
36900198
Reads aligned (%)
95.6
Duplicates removed (%)
65.9
Number of peaks
310 (qval < 1E-05)

Base call quality data from DBCLS SRA