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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ikzf1
wikigenes
PDBj
CellType: B3
ATCC
MeSH
RIKEN BRC
SRX149203
GSM936201: epitope-tagged HA-Ikaros, rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ikzf1
Cell type
Cell type Class
Blood
Cell type
B3
NA
NA
Attributes by original data submitter
Sample
source_name
ChIP-Seq data from HA-Ikaros transduced B3 cells using Anti-haemagglutinin (HA)
cell line
pre-B cell line B3
cell line reference
Brown et al. 1997
chip antibody
Anti-haemagglutinin (HA) (Covance).
Sequenced DNA Library
library_name
GSM936201: epitope-tagged HA-Ikaros, rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
32269632
Reads aligned (%)
94.0
Duplicates removed (%)
19.2
Number of peaks
12771 (qval < 1E-05)
mm9
Number of total reads
32269632
Reads aligned (%)
93.7
Duplicates removed (%)
19.1
Number of peaks
12837 (qval < 1E-05)
Base call quality data from
DBCLS SRA