Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Psc

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cell line
cell line
S2
chip antibody
PSC custom made rabbit polyclonal antibody that was affinity purified (described in Francis et al., 2009. PMID: 19303136)
facs sorting antibody
H3
cell cycle profile
asynchronous

Sequenced DNA Library

library_name
GSM936117: PSC_control_S2_ChIPSeq replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
13972800
Reads aligned (%)
58.8
Duplicates removed (%)
16.0
Number of peaks
3843 (qval < 1E-05)

dm6

Number of total reads
13972800
Reads aligned (%)
55.8
Duplicates removed (%)
19.4
Number of peaks
3712 (qval < 1E-05)

Base call quality data from DBCLS SRA