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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Psc
wikigenes
PDBj
CellType: S2
ATCC
MeSH
RIKEN BRC
SRX149192
GSM936117: PSC control S2 ChIPSeq replicate 2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Psc
Cell type
Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
source_name
S2 cell line
cell line
S2
chip antibody
PSC custom made rabbit polyclonal antibody that was affinity purified (described in Francis et al., 2009. PMID: 19303136)
facs sorting antibody
H3
cell cycle profile
asynchronous
Sequenced DNA Library
library_name
GSM936117: PSC_control_S2_ChIPSeq replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
13972800
Reads aligned (%)
69.2
Duplicates removed (%)
19.4
Number of peaks
3712 (qval < 1E-05)
dm3
Number of total reads
13972800
Reads aligned (%)
69.9
Duplicates removed (%)
16.0
Number of peaks
3843 (qval < 1E-05)
Base call quality data from
DBCLS SRA