Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic testis
NA
NA

Attributes by original data submitter

Sample

source_name
FACS-purified Pou5f1-GFP-positive germ cells
tissue
Embryonic day 13.5 male-gonad
strain
(CBA/CaJ X C57BL/6J)F16+ X Hsd:ICR(CD-1)
ChIP
none, input-DNA

Sequenced DNA Library

library_name
GSM936099: Replicate-2-e13.5PGC-input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
38065359
Reads aligned (%)
85.3
Duplicates removed (%)
32.8
Number of peaks
55086 (qval < 1E-05)

mm9

Number of total reads
38065359
Reads aligned (%)
85.2
Duplicates removed (%)
32.9
Number of peaks
55368 (qval < 1E-05)

Base call quality data from DBCLS SRA