Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic testis
NA
NA

Attributes by original data submitter

Sample

source_name
FACS-purified Pou5f1-GFP-positive germ cells
tissue
Embryonic day 13.5 male-gonad
strain
(CBA/CaJ X C57BL/6J)F16+ X Hsd:ICR(CD-1)
ChIP
none, input-DNA

Sequenced DNA Library

library_name
GSM936091: Replicate-1-e13.5PGC-input, 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
16826274
Reads aligned (%)
79.7
Duplicates removed (%)
17.0
Number of peaks
5415 (qval < 1E-05)

mm9

Number of total reads
16826274
Reads aligned (%)
79.6
Duplicates removed (%)
17.1
Number of peaks
5642 (qval < 1E-05)

Base call quality data from DBCLS SRA