SRX1490481
GSM1974556: Input Human Brain PrecentralGyrus HS1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Precentral gyrus
NA
NA

Attributes by original data submitter

Sample

source_name
Human female precentral gyrus tissue
tissue
Precentral gyrus
gender
female
age
68
Cause of death
Myocardial decompensation with sepsis
postmortem delay
4.2 hrs
experiment type
Input
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslink, Lyse and Immunoprecipitate Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24038078
Reads aligned (%)
93.5
Duplicates removed (%)
6.9
Number of peaks
1080 (qval < 1E-05)

hg19

Number of total reads
24038078
Reads aligned (%)
92.8
Duplicates removed (%)
8.9
Number of peaks
1031 (qval < 1E-05)

Base call quality data from DBCLS SRA