SRX149004
GSM935894: ChIP-seq of WCE in mES after non-targeting shRNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
murine embryonic stem cells
treatment
non-targeting shRNA
strain
C57BL/6 (female) x 129/S (male)
cell type
mES
chip antibody
none

Sequenced DNA Library

library_name
GSM935894: ChIP-seq of WCE in mES after non-targeting shRNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27080941
Reads aligned (%)
98.3
Duplicates removed (%)
14.4
Number of peaks
508 (qval < 1E-05)

mm9

Number of total reads
27080941
Reads aligned (%)
98.0
Duplicates removed (%)
14.4
Number of peaks
527 (qval < 1E-05)

Base call quality data from DBCLS SRA