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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CDK9
wikigenes
PDBj
CellType: P493-6
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX148963
GSM935136: P4936 T1 CDK9; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CDK9
Cell type
Cell type Class
Blood
Cell type
P493-6
NA
NA
Attributes by original data submitter
Sample
source_name
B-cell lymphoma
chip antibody
Cdk9
cell type
P493-6
time
1 hr
Sequenced DNA Library
library_name
GSM935136: P4936_T1_CDK9
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
29262318
Reads aligned (%)
90.9
Duplicates removed (%)
9.0
Number of peaks
874 (qval < 1E-05)
hg19
Number of total reads
29262318
Reads aligned (%)
89.9
Duplicates removed (%)
9.9
Number of peaks
1093 (qval < 1E-05)
Base call quality data from
DBCLS SRA