Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MBD3

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231
tissue
Breast
chip antibody
MBD3
cell line
MDA-MB-231

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tagmentation and PCR amplification were performed using Nextera XT kit (Illumina).

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
74312781
Reads aligned (%)
108.3
Duplicates removed (%)
36.5
Number of peaks
6395 (qval < 1E-05)

hg38

Number of total reads
74312781
Reads aligned (%)
112.0
Duplicates removed (%)
35.3
Number of peaks
7561 (qval < 1E-05)

Base call quality data from DBCLS SRA