SRX1489433
GSM1974448: MBD3 rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MBD3

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231
tissue
Breast
chip antibody
MBD3
cell line
MDA-MB-231

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tagmentation and PCR amplification were performed using Nextera XT kit (Illumina).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50887944
Reads aligned (%)
87.9
Duplicates removed (%)
22.8
Number of peaks
4970 (qval < 1E-05)

hg19

Number of total reads
50887944
Reads aligned (%)
86.6
Duplicates removed (%)
23.8
Number of peaks
4236 (qval < 1E-05)

Base call quality data from DBCLS SRA