SRX148898
GSM934618: VDR-ChIP + TGFb; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX2
chip antibody
VDR
treatment
1ng/ml TGFb
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM934618: VDR-ChIP + TGFb
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
32685886
Reads aligned (%)
95.5
Duplicates removed (%)
22.5
Number of peaks
1223 (qval < 1E-05)

hg38

Number of total reads
32685886
Reads aligned (%)
96.6
Duplicates removed (%)
20.8
Number of peaks
1103 (qval < 1E-05)

Base call quality data from DBCLS SRA