Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX2
chip antibody
VDR
treatment
100nM calcipotriol + 1ng/ml TGFb
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM934617: VDR-ChIP + calcipotriol +TGFb
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
30625223
Reads aligned (%)
80.8
Duplicates removed (%)
14.6
Number of peaks
15459 (qval < 1E-05)

hg38

Number of total reads
30625223
Reads aligned (%)
82.9
Duplicates removed (%)
13.2
Number of peaks
15541 (qval < 1E-05)

Base call quality data from DBCLS SRA