SRX148896
GSM934616: SMAD3-ChIP + TGFb; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD3

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX2
chip antibody
SMAD3
treatment
1ng/ml TGFb
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM934616: SMAD3-ChIP + TGFb
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35283795
Reads aligned (%)
95.5
Duplicates removed (%)
43.8
Number of peaks
14685 (qval < 1E-05)

hg19

Number of total reads
35283795
Reads aligned (%)
94.8
Duplicates removed (%)
45.0
Number of peaks
14739 (qval < 1E-05)

Base call quality data from DBCLS SRA