SRX148893
GSM934613: input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX2
chip antibody
none
treatment
none

Sequenced DNA Library

library_name
GSM934613: input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37172791
Reads aligned (%)
94.9
Duplicates removed (%)
17.2
Number of peaks
1307 (qval < 1E-05)

hg19

Number of total reads
37172791
Reads aligned (%)
93.9
Duplicates removed (%)
19.0
Number of peaks
1308 (qval < 1E-05)

Base call quality data from DBCLS SRA