SRX148892
GSM934612: VDR-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX2
chip antibody
VDR
treatment
none
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM934612: VDR-ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29467253
Reads aligned (%)
93.5
Duplicates removed (%)
31.9
Number of peaks
1063 (qval < 1E-05)

hg19

Number of total reads
29467253
Reads aligned (%)
92.4
Duplicates removed (%)
33.8
Number of peaks
1194 (qval < 1E-05)

Base call quality data from DBCLS SRA