SRX148876
GSM934591: uH2b ChIP-Seq USP49 knockdown; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2Bub

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
uH2b ChIP-Seq USP49 knockdown
cell line
HCT116
cell type
colorectal carcinoma
chip antibody
anti-uH2B (Millipore Cat# 05-1312)

Sequenced DNA Library

library_name
GSM934591: uH2b ChIP-Seq USP49 knockdown
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62096923
Reads aligned (%)
98.6
Duplicates removed (%)
90.2
Number of peaks
231 (qval < 1E-05)

hg19

Number of total reads
62096923
Reads aligned (%)
98.1
Duplicates removed (%)
90.9
Number of peaks
258 (qval < 1E-05)

Base call quality data from DBCLS SRA