Curated Sample Data


Genome
mm9
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type Class
Blood
Cell type
Pro-B cells

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Pro-B
genotype
Pax5(-/-)
extraction method
3-4 week culture
tissue
Bone Marrow

Metadata from Sequence Read Archive

Library Description


library_name
GSM932972: DHS-seq Pax5-deleted pro-B [8438]
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
34617803
Reads aligned (%)
76.1
Duplicates removed (%)
5.6
Number of peaks
14332 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA