SRX148844
GSM932972: DHS-seq Pax5-deleted pro-B [8438]; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype
Pax5(-/-)
extraction method
3-4 week culture
tissue
Bone Marrow

Sequenced DNA Library

library_name
GSM932972: DHS-seq Pax5-deleted pro-B [8438]
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34617803
Reads aligned (%)
76.2
Duplicates removed (%)
5.4
Number of peaks
14353 (qval < 1E-05)

mm9

Number of total reads
34617803
Reads aligned (%)
76.1
Duplicates removed (%)
5.6
Number of peaks
14332 (qval < 1E-05)

Base call quality data from DBCLS SRA