SRX148842
GSM932970: DHS-seq pro-B [8335]; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype
Rag2(-/-)
extraction method
4-5 day culture
tissue
Bone Marrow

Sequenced DNA Library

library_name
GSM932970: DHS-seq pro-B [8335]
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19358845
Reads aligned (%)
98.3
Duplicates removed (%)
22.0
Number of peaks
7503 (qval < 1E-05)

mm9

Number of total reads
19358845
Reads aligned (%)
98.1
Duplicates removed (%)
22.2
Number of peaks
7488 (qval < 1E-05)

Base call quality data from DBCLS SRA