Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype
Rag2(-/-)
extraction method
4-5 day culture
tissue
Bone Marrow

Sequenced DNA Library

library_name
GSM932968: DHS-seq pro-B [8439], 1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
34386228
Reads aligned (%)
76.6
Duplicates removed (%)
9.6
Number of peaks
39180 (qval < 1E-05)

mm9

Number of total reads
34386228
Reads aligned (%)
76.5
Duplicates removed (%)
9.7
Number of peaks
39136 (qval < 1E-05)

Base call quality data from DBCLS SRA