Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Biotin

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mature B
genotype
Pax5(Bio/Bio)
extraction method
Ex vivo
tissue
Lymph Nodes
strain
mix C57BL/6 and 129
antibody
Dynabeads M-280 Streptavidin (Invitrogen)

Sequenced DNA Library

library_name
GSM932925: Pax5 Bio-ChIP-seq mature B [8097], 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
21343792
Reads aligned (%)
46.8
Duplicates removed (%)
18.7
Number of peaks
12589 (qval < 1E-05)

mm9

Number of total reads
21343792
Reads aligned (%)
46.7
Duplicates removed (%)
19.0
Number of peaks
12646 (qval < 1E-05)

Base call quality data from DBCLS SRA