Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Biotin

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype
Pax5(Bio/Bio) Rag2(-/-)
extraction method
4-5 day culture
tissue
Bone Marrow
strain
C57BL/6
antibody
Dynabeads M-280 Streptavidin (Invitrogen)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
25940338
Reads aligned (%)
81.4
Duplicates removed (%)
21.6
Number of peaks
26443 (qval < 1E-05)

mm9

Number of total reads
25940338
Reads aligned (%)
81.2
Duplicates removed (%)
21.8
Number of peaks
26482 (qval < 1E-05)

Base call quality data from DBCLS SRA