Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Liver tumor
NA
NA

Attributes by original data submitter

Sample

source_name
tet-Myc liver tumor (tet-Myc inactivated for 16h)
strain
FVB
tissue
liver tumor
genotype/variation
tet-Myc/LAPtTA (tet-Myc expression off)
chip antibody
H3K4me3 (Active Motif #39159)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
29023403
Reads aligned (%)
92.1
Duplicates removed (%)
24.8
Number of peaks
24654 (qval < 1E-05)

mm9

Number of total reads
29023403
Reads aligned (%)
91.9
Duplicates removed (%)
24.8
Number of peaks
24657 (qval < 1E-05)

Base call quality data from DBCLS SRA