SRX148639
GSM932877: H3K9me3 chip-IP from glp-4(bn2) mutant C. elegans that underwent smg-1 RNAi; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

source_name
adult C. elegans
strain
SS104, glp-4(bn2)
developmental stage
adult
RNAi target
chrI:6,907,993-6,909,159 (smg-1)
antibody
H3K9me3
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM932877: H3K9me3 chip-IP from glp-4(bn2) mutant C. elegans that underwent smg-1 RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
14860990
Reads aligned (%)
91.3
Duplicates removed (%)
85.0
Number of peaks
1450 (qval < 1E-05)

ce10

Number of total reads
14860990
Reads aligned (%)
91.3
Duplicates removed (%)
85.0
Number of peaks
1451 (qval < 1E-05)

Base call quality data from DBCLS SRA