SRX148638
GSM932876: H3K9me3 chip-IP from nrde-4(gg129) mutant C. elegans that underwent smg-1 RNAi; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

source_name
adult C. elegans
strain
YY453, nrde-4(gg129)
developmental stage
adult
RNAi target
chrI:6,907,993-6,909,159 (smg-1)
antibody
H3K9me3
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM932876: H3K9me3 chip-IP from nrde-4(gg129) mutant C. elegans that underwent smg-1 RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
9883662
Reads aligned (%)
86.2
Duplicates removed (%)
58.7
Number of peaks
1348 (qval < 1E-05)

ce10

Number of total reads
9883662
Reads aligned (%)
86.1
Duplicates removed (%)
58.7
Number of peaks
1345 (qval < 1E-05)

Base call quality data from DBCLS SRA