Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Med12

Cell type

Cell type Class
Blood
Cell type
HPC-7
NA
NA

Attributes by original data submitter

Sample

source_name
HPC7
cell line
hematopoietic cell line HPC7
chip antibody
Med12 (bethyl-A300-774A, lot 1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested, washed with PBS and crosslinked with 1% Formaldehyde for 30 min at 37C. Libraries were constructed with KAPA Hyper Prep Kit and Multiplexed with NextFlex Barcodes from Biooscientific

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
37011981
Reads aligned (%)
93.8
Duplicates removed (%)
48.6
Number of peaks
2125 (qval < 1E-05)

mm9

Number of total reads
37011981
Reads aligned (%)
93.4
Duplicates removed (%)
48.7
Number of peaks
2137 (qval < 1E-05)

Base call quality data from DBCLS SRA