SRX1484891
GSM1973453: Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
HPC-7
NA
NA

Attributes by original data submitter

Sample

source_name
HPC7
cell line
hematopoietic cell line HPC7
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested, washed with PBS and crosslinked with 1% Formaldehyde for 30 min at 37C. Libraries were constructed with KAPA Hyper Prep Kit and Multiplexed with NextFlex Barcodes from Biooscientific

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41654839
Reads aligned (%)
97.0
Duplicates removed (%)
68.1
Number of peaks
531 (qval < 1E-05)

mm9

Number of total reads
41654839
Reads aligned (%)
96.8
Duplicates removed (%)
68.2
Number of peaks
559 (qval < 1E-05)

Base call quality data from DBCLS SRA