Curated Sample Data


Genome
mm9
Antigen Class
TFs and others
Antigen
Ep300
Cell type Class
Blood
Cell type
HPC-7

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
HPC7
cell line
hematopoietic cell line HPC7
chip antibody
p300 (santa cruz sc-585 X, lot j2214)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested, washed with PBS and crosslinked with 1% Formaldehyde for 30 min at 37C. Libraries were constructed with KAPA Hyper Prep Kit and Multiplexed with NextFlex Barcodes from Biooscientific

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
40485880
Reads aligned (%)
83.7
Duplicates removed (%)
42.2
Number of peaks
609 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA