SRX148012
GSM697629: ChIP-Seq for MCAF1 in WM262 melanoma cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF7IP

Cell type

Cell type Class
Epidermis
Cell type
WM262
NA
NA

Attributes by original data submitter

Sample

source_name
Melanomas
chip antibody
MCAF1
antibody catalog number
A300-169A
antibody vendor
Bethyl
antibody lot number
A300-169A-1
cell type
WM262

Sequenced DNA Library

library_name
GSM697629: ChIP-Seq for MCAF1 in WM262 melanoma cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
21240584
Reads aligned (%)
77.8
Duplicates removed (%)
47.7
Number of peaks
464 (qval < 1E-05)

hg38

Number of total reads
21240584
Reads aligned (%)
78.3
Duplicates removed (%)
46.4
Number of peaks
345 (qval < 1E-05)

Base call quality data from DBCLS SRA