SRX148008
GSM697625: ChIP-Seq for SetDB1 in WM262 melanoma cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETDB1

Cell type

Cell type Class
Epidermis
Cell type
WM262
NA
NA

Attributes by original data submitter

Sample

source_name
Melanomas
chip antibody
SetDB1
antibody catalog number
SC-66884
antibody vendor
Santa Cruz
antibody lot number
A2809
cell type
WM262

Sequenced DNA Library

library_name
GSM697625: ChIP-Seq for SetDB1 in WM262 melanoma cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
7014397
Reads aligned (%)
92.7
Duplicates removed (%)
39.5
Number of peaks
819 (qval < 1E-05)

hg38

Number of total reads
7014397
Reads aligned (%)
93.1
Duplicates removed (%)
38.8
Number of peaks
790 (qval < 1E-05)

Base call quality data from DBCLS SRA