Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
chip antibody
IgG (Thermo scientific, 23212, lot LI150449)
cell type
embryonic stem cells
transfection/genotype
shFbxl10

Sequenced DNA Library

library_name
GSM930146: IgG_shFbxl10
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
69238088
Reads aligned (%)
83.1
Duplicates removed (%)
78.4
Number of peaks
608 (qval < 1E-05)

mm9

Number of total reads
69238088
Reads aligned (%)
82.9
Duplicates removed (%)
78.5
Number of peaks
618 (qval < 1E-05)

Base call quality data from DBCLS SRA